The short answer is yes. But I wouldn't bother with the GT610 as it's so underpowered, I would either use the on-die Intel HD graphics or look at a more powerful graphics card. If it's just normal office stuff, web browsing and video playback I'd go with the on-die Intel HD, if you're looking to play games I'd be looking to a Radeon HD 7750 or GT640 as a bare minimum.
PCIe 3.0 is really only be needed by the really high-end graphics cards in the coming months and years as graphics cards get more powerful and need faster interfaces with the memory and cpu. Just now, PCIe 2.0 is capable enough for all but the most powerful graphics, even the the most powerful are only marginally held back.