If you have a discrete GPU it won't install the Integrated graphics unless you start the PC w/o GPU installed.
Lucid MVP Driver is for the 6 sound connecters on the back I don't think those will install either if nothing is connected to them.
Intel Rapid Start I think only works with SSD. I could be wrong there too, or is for skipping the BIOS?
MSI Z87 G45 downloads / Utilities/ Download MSI Live update and use that to SCAN, If you don't have internet connection though this won't work so you have to do all USB.
I have the same board.