Affliction98 :
Jaxem :
Is the cover one of those round ones to channel air directly to the CPU cooler?
here this is what it is http://img.ebaypictures.net/images/dcb1e91f-e3bf-4ba3-b951-20ccb2f0b5e7.jpg
Ah, that does limit you quite a bit, the motherboard is mounted on the opposite side, so the gpu will be pointed up...it wouldn't be able to extend too much past the slot itself, and you couldn't get too much more wiggle room by hacking at that shroud.
Pretty sure you could fit one of these though, if you look at a side shot pic of it, it's only as long as the slot:
http://www.newegg.com/Product/Product.aspx?Item=N82E16814130827
Bear in mind your CPU is going to be blowing hot air right onto the GPU intake, so your temps might be up a little bit when playing.