There is no 'Noctua 5 dual Heatpipe' lol are you talking about the D14, U14, U12, etc?
The NH-D14 will perform similarly to the H100i at stock voltages and clock rates, but the H100i will beat out slightly at moderate or more overclocks. The H100i is noticeably louder though at full RPM than the Noctua fans are.
If your case doesn't have a window, I would go with the Noctua D14. If it does have a window, and you care a lot about aesthetics, the H100i is also a great choice.