mickypheonix :
it is not a bad idea to run fans off of a psu at all , there is nothing wrong with it , explain your reasoning as to why it is a bad idea ?
It's not technically a bad idea, but you have more control if you can plug it into your motherboard, as you most likely know (most likely = 99% chance).
For anyone glancing upon this in a random google search though, plugging a 3/4 pin into your motherboard and either tweaking your BIOS settings or using software like Speedfan to auto control your fans gives you a quieter system compared to full throttle on with a 3/4pin-molex connector or a fixed molex connector that won't allow you to change fan speed without physically changing adapters.
Fan controllers are also a good option if you don't want to do it software side.