Sorry for the thread necro, but figured I would post if anyone is in a similar circumstance. I have the Xpredator-X1 case, and ordered the Hyper 212 EVO and it DOES fit with about 1/4in of room left above it. My mobo is the Gigabyte GA-Z97MX-Gaming 5.
I'm not sure if case size specs normally account for the part on the removable sides that extend like half of an inch, but the cooler fit in with just barely enough room above. I'm not sure if I'll run into any problems with the heat, but there are hole vents right above it.
I first found this thread through googling about the 212 EVO and this case, so hopefully this helps someone. But again, I'm not sure if the barely 1/4in of room above the cooler to the side of the case is not recommended by experts.