whodatwo,
In the Dell Precision T3500 manual >
http://www.levnapc.cz/ProductsFiles/precision-t3500-servisni-manual-en.pdf
> on Page 7 a 2,3,4 error code is listed as "Possible USB failure".
1. When I see something like this after an upgrade, I always suspect that a motherboard or port connection or was pulled out when making a power connection- that kind of thing. Check all the wires on the MB and USB ports especially on the front, but the back panel as well.
2. However. Dell Precisions also are very fussy about the thermal control. My T5400 has a switch on the lid and if the lid if removed while running, I get a "thermal control is compromised" message and the fans accelerate to a roar. So, if you removed the stock CPU fan, the T3500 may register that there is no CPU cooling or some such -cooling system comprised- and the amber power switch means it should be shut down. It won't have an automatic thermal shutdown as the cooling is probably much improved.
Out of curiosity, did you convert to liquid cooling because of temperatures seen while rendering? I nearly soiled myself when I saw the Quadro 4000 at 102C while rendering. I've watched it constantly ever since and have never seen over 75C but I'm still looking at a Gelid Icy Vision GPU cooler.
An odd problem- let us know what you find out.
Cheers,
BambiBoom