1) You can connect a 3-pin fan to a 4-pin mount on the motherboard. I'm not quite sure what you mean by "only the other 3".
Some boards now only support PWM (4-pin) fans properly. My Asus supports BOTH for the case fans but only PWM for the CPU.
2) The fans will spin but you can only CONTROL THE SPEED if both conditions are met:
a) The motherboard fan control supports VOLTAGE as well as the already supported PWM method of fan control, and
b) The fans are designed to be variable (some are meant to run at 12 Volts only)
3) So connect the fans, install the motherboard software and go into the fan control section and see if you can control them. You'll also need this for the CPU FAN.