Saberus :
It's a matter of preference.
Quiet PCs are useful to those who have surround sound audio, as the drone of a fan would be noticeable over the speakers and get annoying. Also for those who record audio, where outside noise needs to be filtered out or cancelled, and too much will degrade the quality of the audio.
Those who use headphones might have a higher threshold where noise becomes an issue, either from hearing it over the headphones, or the sound overpowering the noise-cancellation of a mic used for team chat or the like.
Lots of people want quiet or even silent PC's regardless of what configuration they have. All my fans are almost silent except my video card which is still pretty quiet but even in idle I notice it at times so my next card will be one that has 0dB fan mode.
(I don't understand your comment about quiet PC's being useful to surround sound users...)
*OTHER:
I never did comment on a cooler model as I said it was subjective, though I will recommend a particular cooler and that is the Noctua NH-U12S. You should also open the FAN SOFTWARE and adjust that for optimal noise/cooling (most motherboards have fan software such as "Asus Thermal Rader etc" from the motherboard support site though it may be BUNDLED in a main package... see the motherboard manual. Not all case fans can be controlled from the motherboard (some are 3-speed controlled via a switch). Some are non-variable.
The Cooler master 212 Hyper EVO cooler is cheaper and quite adequate for most people, though it is louder especially under CPU LOAD. Many people are fine with it, others will spend extra on the quieter coolers. At roughly $30 difference that's 3% the cost of a $1000 PC so it's not bad if you think about it that way.
On my dad's PC I set the Noctua NH-U12S fan speed to 300RPM (20%) and started the ramp up at 45degC. The CASE fan started to vibrate the whole case so it's temporarily disabled while I sort that out which probably will be some thin material I can shove between fan and case to dampen vibration.
I replaced my case fans with variable PWM fans and while I did set a profile they never go above 800RPM and are essentially SILENT.
Other:
As someone else said, you can replace components later. In the case of the EVO cooler it's possible to replace the fan as any compatible 12cm fan will work though not all have the right specification (i.e. PWM, RPM range).
*Note that fan software uses 40% as the minimum for case fans (20% for CPU) usually. You want the maximum minimum to be about 700RPM or roughly 1800RPM max. By variable it has a range such as 700RPM to 1800RPM but NOT listed as 1800RPM plus/minus 10%.
As said, my dad's PC (Intel i5-4670K) can stay cool enough, at 20degC room ambient to have the Noctua fan spin at only 300RPM which is silent. I replaced the EVO cooler fan with a Noctua and it also become silent in idle.
There are GRAPHICS CARDS (if you haven't bought yet) that have a 0dB option so the fans will turn off. Some but not all of the NVidia 900 series have this (960, 970 etc..).
So the CPU fan and CASE fans are really the only thing that is easily replaced (or rather, cheaply replaced).