Same issue here, I got an msi r9 270x with crimson recently updated with ddu to relive 16.12.2 and crimson shows pci express 2.0 x8 instead of x16. My mobo is gigabyte ex58ud3r rev1.0 and no other devices used with pci... Tried everything till now, clean the dust, use the second pci express of the mobo which worked at x16 for some days then I noticed it changed to x8 again, reinstall drivers and windows again, tried both win7 and win10, I haven't resolved it.... Bios also checked, all defaults apart from the xmp profile that I activated and sata mode that I changed from ide to ahci....