For a couple more dollars here is a good Intel based system
PCPartPicker part list:
http://pcpartpicker.com/p/j282qs
Price breakdown by merchant: http://pcpartpicker.com/p/j282qs/by_merchant/
CPU: Intel Core i5-4690K 3.5GHz Quad-Core OEM/Tray Processor ($219.99 @ SuperBiiz)
CPU Cooler: Cooler Master Hyper 212 EVO 82.9 CFM Sleeve Bearing CPU Cooler ($24.89 @ OutletPC)
Motherboard: Gigabyte GA-Z97MX-Gaming 5 Micro ATX LGA1150 Motherboard ($125.95 @ B&H)
Memory: Kingston HyperX Fury Black 16GB (2 x 8GB) DDR3-1866 Memory ($59.99 @ Amazon)
Storage: Samsung 850 EVO-Series 120GB 2.5" Solid State Drive ($68.75 @ OutletPC)
Storage: Seagate Barracuda 2TB 3.5" 7200RPM Internal Hard Drive ($65.89 @ OutletPC)
Video Card: MSI Radeon R9 390 8GB Video Card ($329.98 @ SuperBiiz)
Case: Fractal Design Define R4 w/Window (Black Pearl) ATX Mid Tower Case ($79.99 @ Newegg)
Power Supply: EVGA 750W 80+ Gold Certified Fully-Modular ATX Power Supply ($84.99 @ NCIX US)
Wireless Network Adapter: Belkin F9L1001 802.11b/g/n USB 2.0 Wi-Fi Adapter ($6.99 @ Micro Center)
Total: $1067.41
Prices include shipping, taxes, and discounts when available
Generated by PCPartPicker 2016-04-11 08:26 EDT-0400
If you want the latest Intel stuff
PCPartPicker part list:
http://pcpartpicker.com/p/JmDs6h
Price breakdown by merchant: http://pcpartpicker.com/p/JmDs6h/by_merchant/
CPU: Intel Core i5-6600K 3.5GHz Quad-Core Processor ($239.99 @ Newegg)
CPU Cooler: Cooler Master Hyper 212 EVO 82.9 CFM Sleeve Bearing CPU Cooler ($24.89 @ OutletPC)
Motherboard: Gigabyte GA-Z170MX-Gaming 5 Micro ATX LGA1151 Motherboard ($141.99 @ SuperBiiz)
Memory: Corsair Vengeance LPX 16GB (2 x 8GB) DDR4-3000 Memory ($74.99 @ Amazon)
Storage: Samsung 850 EVO-Series 120GB 2.5" Solid State Drive ($68.75 @ OutletPC)
Storage: Seagate Barracuda 2TB 3.5" 7200RPM Internal Hard Drive ($71.99 @ Newegg)
Video Card: MSI Radeon R9 390 8GB Video Card ($329.98 @ SuperBiiz)
Case: Fractal Design Define R4 w/Window (Black Pearl) ATX Mid Tower Case ($79.99 @ Newegg)
Power Supply: EVGA 750W 80+ Gold Certified Fully-Modular ATX Power Supply ($84.99 @ NCIX US)
Wireless Network Adapter: Belkin F9L1001 802.11b/g/n USB 2.0 Wi-Fi Adapter ($6.99 @ Micro Center)
Total: $1116.55
Prices include shipping, taxes, and discounts when available
Generated by PCPartPicker 2016-04-11 08:28 EDT-0400
Both change the CPU Motherboard and CPU cooler
Get the first if it needs to be really close to $1000 and the second for preformance