Hey there, Sarah.
I haven't personally used that software, but my guess is that you won't be able to do that unless the OS and the programs are on a separate partition. However, if everything is on a single partition, you won't be able to do that. It would be best if you get in touch with the software developer's customer support and ask for more info on how to use the migration tool.
Hope that helps.
Boogieman_WD