What you describe is not what I have seen in the past. What I saw with this Hub was:
1. The Hub has six 3-pin ports on its sides for fans, of which one is white for Fan #1. ONLY the fan on this port will have its speed reported to the mobo header you connect this Hub to.
2. The Hub has ONE 4-pin male connector on one end labelled to connect to your mobo's CPU_FAN header. The unit also comes with ONE cable to make this connection.
3. On the opposite end the Hub has a male 2-pin connector labeled SATA 12V. The unit comes with ONE cable to connect this port to a SATA power output connector from the PSU. This is how the Hub gets power for all its fans.
4. The Hub also comes with two 3-pin fan Y-splitters. Each of these MAY be used to connect two fans to one of the six Hub ports. Just do NOT use them with the white Port #1. The Hub's specs say you can use up to 5 splitters so that it can power up to 11 fans - they just include two splitters to get to started if you need them.
Phanteks recommends that you connect the Hub's 4-pin fan input to the mobo CPU_FAN header (and labels the Hub port that way) because this Hub MUST have a genuine PWM signal from a 4-pin mobo header using PWM Mode for control. Unfortunately, SOME current mobos have 4-pin SYS_FAN or CHA_FAN headers intended for case fan ventilation that are NOT true 4-pin headers - they operate in Voltage Control Mode and have a useless 4th pin. To avoid having you use such a mobo header and finding the Hub fails to control its fans, Phnateks advises that you always use the CPU_FAN header because all current mobos use true 4-pin headers for that function, and have them pre-set to use PWM Mode for control. When you do this, you also REALLY MUST follow their related instruction: the actual CPU cooler system MUST be plugged into Hub Port #1 (the White one) so that the speed of THAT fan specifically is sent to the CPU_FAN header for monitoring.