Just a few questions...
1. Are we talking about a Win 10 OS here?
2. The disk-cloning operation failed since your 1 TB HDD still remains the boot drive.
3. Is that 39 MB first partition on the 1 TB HDD the System Recovery partition? If not, what is it? Is there any data in that partition? If so, how much? (You'll probably have to assign a drive letter in Disk Management to explore the contents of that partition).
4. I'm assuming Win 10 was either fresh-installed on the 1 TB HDD at some time or perhaps that OS was cloned from another drive to the 1 TB HDD.
5. Is the PC a self-built machine or a custom PC or is it an OEM PC? (Oh, I did see a reference to "OEM partition")
6. Before the disk-cloning attempt to your 128 GB SSD was the 1 TB operation without problems? It booted to the Win 10 OS OK and functioned fine?
7. As best I can tell there's hardly any data in the entire system (the two drives) excepting (apparently) OS files in the 1 TB C: partition and the SSD's D: partition. The only other location where it appears there is some data is in the E: partition of the 1 TB HDD - perhaps 13 GB to 14 GB worth of data. Is this right?
Please respond to my questions clearly and in detail, OK?