Hyper 212 in MATX Case

Solution
No it won't fit.
Get the Cryorig M9i/M9a if you want a cooler that performs slightly better and quieter, also costs only $19.
The i is for Intel, and the a is for AMD CPUs.

Karadjgne

Titan
Ambassador
According to Google, the CM Masterbox 3 lite has a cooler clearance of 157mm. The hyper212 is 160mm. So that's pretty much a No, it won't fit. The Cryorig H7 is in the same budget range and is considerably better than the hyper212 and is only 145mm tall, so not only will it fit, it'll work better and quieter.