More info would help, but I will try to explain.
You fan is for 3 pin fans and MAY work if the board has voltage control on the port you use.
Fans use 3 or 4 pins. They are
+ voltage(12 or variable depending on the header)
- or ground
Speed sense/ tach (tells you how fast the fan spins. This is most likely the missing pin on one of your splitter plugs because you only read the speed from one fan)
PWM (4 pin fans only. This controls speed)
Computers have two fan control methods.
Voltage Control.
This is used for 3 pin fans and works with 4 pin fans as well. Some 4-pin boards headers use this method for all fans(compatible with anything). Check the manual or post your board for further help on this.
PWM.
PWM controls fans with a pulsed signal that tells the fan how fast to go(it is a percentage of on to off time. Think of it as rapidly switching a fan on and off, longer off time means the fan spins slower). This mode of control uses the 4th pin and does NOT control 3 pin fans. 3 pin fans on PWM only headers run full speed all the time. This is because the power pins on a PWM header always run full voltage instead of adjusting it the way a 3 pin header can.
Please note some boards do NOT control fans at all on some headers.