OK, back to report new findings. I removed the laptop hdd and things seemed to be going well, but nope, it suddenly happened again, only a bit longer this time. The previous offings have occurred around 5-6 hours after turning on, this one was about 9ish hours. It then happened again, twice during a game session, and I left it yesterday with the gpu not working properly, the fans wouldn't kick in at start up for some reason. Took a look at it just now when I got up, turned the desktop on it's side and after moving a seemingly inconspicuous unplugged cable coming from the psu out the way, the fans kicked in and the comp booted properly again. One thing to note was that during the hdd removal, the clip for the gpu slot on the motherboard broke off, though I'm not sure if that would cause the issue. So I may have possibly figured it out, the gpu fans may not have been working due to cable placement and so the computer would force shut down because the card was getting pipping hot with no way to cool down.
I am worried about that broken off clip on the MB though, would that also be cause for concern? Should I use a different slot, though that would take some rerouting of the power cables.