rocktalkrock :
The 4th pin is PWM or Pulse Width Modulation and it does a better job at reducing and controlling fan speed than reducing the voltage for a 3-pin fan.
The 3-pin may or may not be enough to power your RGB fans, that's why your case also has the Sata power cable. Only using the 3-pin cable may also bypass the controller button on top of your case.
Thanks for the help so far, I'm a little confused what you mean by the last sentence. The situation will be : my 780t fan controller will be powered via sata. My 4 pin case fans will be connected to my fan controller 3 pin headers. My 4 pin case fans will also be connected to the RGB header on my MB. Will this configuration work, will my fan controller 3 speed push button still operate correctly even though it is only 3 pin headers. I apologize if I'm not following.