I have the following criteria for a good case:
1. It must look good to YOU. You will be looking at it for a long time. Apparently OK there.
2. It must hold your parts. OK there.
3. It must have at least two 120/140mm front intakes that are filtered. OK.
That gives you a positive pressure airflow that keeps your parts clean.
Two decent fans is all the intake you will need to cool your parts.
4. If going with air cooling(which I like best) you need to hold the prospective cooler. Your case has 193mm available, the NH-D15 is 165mm. OK there.
Some comments on the parts selection.
1. NH-D15 is a fine cooler, but I like the similarly priced NH-D15s better. It is designed to clear tall ram heat spreaders like those on the corsair vengeance series. 160mm tall.
2. Noctua comes with excellent NT-H1 paste, no need for the as5.
3. On a high end build like this, I would never build without a SSD for windows.
I like Samsung evo, 240gb minimum. Defer on the hard drive until you actually need the space.
It is easy to add one later.
With ssd prices down, consider a 500gb ssd and you may never need a hard drive at all.
4. Love EVGA as a brand, but I would pass on the hybrid variant.
The evga GTX1080ti SC2 or FTW will have the same boost clock, and be easier to mount. It should also be cheaper.