Oh? OK, that's a new one, didn't know that. Prior, the cpu_fan header has been dedicated pwm, well for the last 10 years ± anyways. If true (it's about time!) that's a bonus.
The H55 has 2 leads, one from the fan, one from the pump. Corsair directions state the pump should be attached to the cpu_fan header and the fan to any sys_fan header. This is done for a reason. Prior (thanks paperdoc) the cpu_fan header was 12v dedicated pwm. If you put an analog device, such as 3pin fan or the pump, in that header it would have zero options but to run full 12v speed, no analog voltage control. This guaranteed that corsair wouldn't see a for bad pumps, when really it would be slow because the voltage was lowered. Also, that particular header has a safety feature, if it sees 0rpm, it will shut the pc down or fail to boot and give a cpu-fan error. Meaning if the pump fails, it shuts the pc down.
Bad thing about that hookup is the fan on a sys_fan header. In bios, the temps are set high, max fan speed doesn't happen until @70°C. Case temp. Since the case barely ever exceeds 40°C, the fan is always running minimal rpm, and you get funky high cpu temps at high loads. Ppl forget to change the bios settings to more closely resemble the case temp. It's really not a good solution, but is the best outcome for Corsair.
Me, I do it backwards. Pump on sys_fan header, change/disable bios for that header to full 12v ability, fan goes to Cpu_fan header, works as normaly should. Cpu temp goes up, fan gets faster. Alternatively, some mobo's like many of the Asus boards, have a cpu_aux header. That's a perfect header for a pump as it's dedicated 12v with no pwm or analog control.
My H55 has been purring along happily 24/7/365 for the last 5 years.