I'm playing the level titled "shore leave". I'm at a point where I and several others are to be evacuated in a VTOL. The NPCs are all standing around waiting for me to do something but I can't figure out what. The pilots are dead so I was expecting to have to fly the VTOL but I can't get into the cockpit. There's a green dot on the radar indicating a goal of some sort but the spot where the dot is is nothing but a mud puddle. HELP!!!

He's right find all the KPA, they might stuck behind a tree or something... Then you might be able to continue.

I'm not sure what's going on, I just re-played that part and after commanding the marines to get in the VTOL he lets emmerson know that the LZ is secure and he is leaving... Emmerson then instructs psycho to stay on ground and move on and infiltrate the Harbor which is where my Green Dot on the map leads. Something Like this happened to me while playing the first Crysis...I was supposed to meet Prophet at a cave entrance and when I got there the entrance was blocked. Prophet just followed me around while I looked for another way in and I ended up having to reinstall The game... The cave then was opened. Weird.