Ok, so here are the things that i have tried since i asked this question.
Ive tried running windows repair 5 times one after the other, it comes back that there is not boot problem every time
Have confirmed that my C drive is (Healthy, System, boot, page file, Active, crash dump and primary partition) as shown in disk management
If i remove the windows 7 dvd it wont boot from hard drive comes up with insert system boot disk and press enter
If i leave windows 7 dvd in it will boot off dvd and run windows as per normal
Last night i decided that i must of made a mistake in the "fresh install" so completed another but alas that same issue is present.
Where do i go from here?