Its all about the speed of the fans... And how much noise you can take!
For example, a 2600rpm 80mm fan will make about 20-25db (hopefully). A 4000rpm 80mm fan will make your computer sound like a model airplane - but it will pull more air in, which is measured in cubic feet per minute(cfm), I believe.
A 2600rpm 120mm fan will sound a little louder as the 80mm, again, hopefully. But it will pull alot more air than the 80mm, because its bigger and scoops in more air. If you don't really need that much cfm, get a lower speed 120mm - it'll be quieter.
So yeah, 120mm is the way to go. Speed is up to you. Just do your research and get a nice quiet one - the lower the rotation, the lower the noise.
I've used vantec stealth fans in my case (80mm variant) and they're pretty good. Lasted 5yrs so far, not one's dead yet.
Here's a link to the 120mm variant.
http://www.newegg.com/Product/Product.asp?Item=N82E16811999614