Gigabyte P35-DS3R sata raid problems?

Alright i had my computer up and running for about a week, i decided to exchange my Scythe Ninja heatsink for a tuniq tower 120, so when it arrived i completely took apart my entire computer and rebuilt the entire thing. The only part that is actually different is the heatsink. So when i got to boot up my pc no matter what i do it will start to load windows at the screen with the bar and then it will just freeze. It seemed like my raid hardrives werent booting windows properly so i reconfigured the raid. Since i did that i had to reinstall windows, so i did, i used the same raid drivers as i did the first time which worked but this time whenever i start formating my drives it will get to 100% and then just freeze. Only once did it get past the formating and it began installing windows but it took extremely long (2 hours only got it 70%). I am guessing something is messed up in my bios that is screwing up my raid drives. Or it could be that my drives got damaged somehow. I tryed reverting my bios from F5e to F3 but still the same problem.