Exe application not found

Cyber security virus attached itself to my computer. I downloaded spyware doctor and now the cyber security virus is gone, but now I receive the message c:/windows/explorer.exe application not found and each time I try and open an application it asks which progam do I want to use.
Please advise how to fix this problem...thank you
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More about application found
  1. can you open command prompt in windows? (Windows Key + R, then type 'cmd')
    If so,
    type: sfc /scannow and see if that helps.

    If you can't get to command prompt, then try booting to command prompt (should be in the same menu as booting 2 safe-mode)

    if that doesn't work, then you may want to try doing an OS repair
    Boot to the installation disk, and after you select language click repair.
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