Did you do a bit-level transfer (clone copy)? If that is the case there is no real apparant difference to applications which could cause them to respond differently to the SSD. In other words, it should not matter for the application if you are using an SSD or HDD, aside from the faster operation it shouldn't introduce any new bug. I would double check your findings, making sure that both disks are an identical copy. You can use linux-based utilities for that. A linux livecd like Ubuntu might be good for this purpose too.