Hello all, Im currently in the middle of a system build, I think I have everything set up correctly so far but there are three 2-pin wires coming from the top of the case which I think are for power, reset and a.n.other. Does anyone know where these plug into? I cant find anywhere that fits.

Those wires are for the the case power switch, and also the reset switch.  The third one is probalby for power/hdd LED status lights.  I've done a build with an Antec 900, but it's been awhile.......though I distinctly remember the switches are at the top.
 
Those wires plug into the "F-panel" spot on your motherboard.  They let you turn the computer on and reset it.  You need to check your motherboard manual to find out which wires go where........every mobo is slightly different.  Your F-Panel on your mobo is located in the very bottom-left of the mobo itself according to the diagrams.......check page 2-33 in your mobo manual....top of the page, it shows you how to hook up those 2-pin wires.
 
Good luck!

Also don't forget the Q-Connector (large white one).
It'll save you alot of time and sore fingers.

Good point!!!  Love that little sucker.

Power switch, reset switch and HDD LED. There is no Power LED, the fans turn on to show the computer is on. I build computers with that case all the time.