Ok so I have tried everthing I can think of. I thought I would give Windows 8 a try and decided that it is not for me, so I went back to Windows 7.
The problem is that now one of my 3TB drives will not let me access it and the other is only showing up as 746.39GB.
When I did the clean install of Windows 7 Enterprise 64x the only drive connected was my OS drive. After installing windows and updating I reconnected the drives. The one that is showing as 746GB showed up as RAW so I formatted it. Loosing everything that was on it. (Another problem for another day)