Ah right! Understood. I will be doing the push pull configuration then, Exhausting the air out. Is that a better bet?
It's more of a preference thing than performance. I would do exhaust to get all the heat out of the system and get the intake from the front of the Storm Trooper, since you can flip the HDD cages. You could do a intake if you wanted the best performance of your CPU temps and not care too much about the rest of the system (only a few C difference for the rest of the system with intake)
Again, it's just preference.
Edit: Also remove your fan filter on the top if you're doing an exhaust or keep it on if you're doing an intake.