First of all, pcie is still way faster that thunderbolt but the only problems here is the price and the right technology.
There is one out there asus made it happens, but only work with 10 listed asus motherboard, and price 200$...for the pcie thunderbolt
The only real option here is the other thunderbolt extension, i dont really remember the specific name, and build in thunderbolt port.
Fear not 40% of 1150(haswell) motherboard PROBABLY will include build in thunderbolt
But th is still way expensive right now, u might want to wait many month to come to let it price down and probably more pcie th card or probably will not happens
Hope i safe from any fire xD