Current graphic cards are not bottlenecked by PCI-e 2.0 Probably next very high end graphic cards ($500+) may be start to be a little bit bottlenecks. Nothing to be bothered at all. But in 2014 I would think that the very high end performance graphic cards will be bottlenecked by PCI-e 2.0. I would guess by 10%, maybe 15%.
If you do not buy very high end graphic cards, then you really do not need to be worried at all. A $350 graphic card probably will not reach the level of a 10% - 15% bottleneck in a PCI-e slot for another 4 years. I'm pretty sure by then you would have saved up enough money to drop an Ivy Bridge CPU in your mobo. Or you would have completely upgraded your PC to the latest and greatest by then.