Sounds like you're looking for a workstation PC with power, here is my suggestion.
Motherboard: GIGABYTE GA-X79-UP4 LGA 2011 Intel X79
CPU: Intel Core i7-3930K six-core
Memory: Corsair Dominator GT 16GB DDR3 2133
Video Card: AMD W8000 4GB Workstation Graphics card (http://www.newegg.com/Product/Product.aspx?Item=N82E16814195117)(More information about the card in that link)
Storage: Corsair Neutron GTX 240GB SSD (For windows and your programs only)
Western Digital Black 2TB 64MB cache Hard Drive (Should be enough to start off)
Power Supply: Corsair HXseries 850w Power Supply
Case: COOLER MASTER HAF 932 full tower case (http://www.newegg.com/Product/Product.aspx?Item=N82E16811119160)
Microsoft Windows 7 professional or ultimate 64bit (Both are very inexpensive since windows 8 is out)
CD/DVD: Asus cd/dvd burner
This might be a lot but the way you will be using it for it would a be good investment or take into consideration.