Rumors were false ... =)
THe way it works, you have to set your BIOS boot sequence properly, and it is not obivous that the Silicon RAID controller will be listed in the sequence as "SCSI Device"
I toy with both drives, a regular IDE-ATA and the S-ATA drives last night, and I was able to pick and choose the sequence.
My booting sequence is:
CDROM
SCSI Device
Disabled (IDE)
Disabled (Network)
Disabled (Floppy)
Needless to say, I don't have a floppy or an IDE drive on my system anymore.
One annoying thing though, because I don't have an IDE-ATA drive anymore, the POST Reporter tells me (it speaks when it boots) "No IDE drives detected". Although I can edit the voice message to nil, I am a bit annoyed that they would see no IDE Drives as an error, but that is just me.