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3rd master hard disk error...but then.

Last response: in Windows 7
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So today I tried to plug in a new webcam and I got a BSOD along with the computer restarting. When it tried to restart, I got a screen (before booting up all the way that said

"3rd master hard disk error"

I figured this was an issue with my hard drives, so I moved them around a bit and got the computer to boot again.

But now my computer is just incredibly slow in general. Everything takes a long time to open or close, chrome takes about 3-4 minutes to open. text takes like 20 seconds per eletter. Any ideas abou what's going on?
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Thanks! you guys have been helpful. I guess scandisk is called CHKDSK in Windows7? I should have clarified...anyways, it's running now. Probably won't be done for about an hour...can anyone tell me what the results will might look like and what I'll have to do in response?
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