File Sync Through FTP

Could someone give some guidance on syncing files with the following setup:
I have External Hard Drive hooked to a Belkin Wireless router through the USB port which I can access with my desktop. I want to be able to save a file on the drive and sync with my home office server using FTP (or other option) so files will automatically update both ways. If I use software on my PC, it requires a fresh sync every time I shutdown and power back on. I have literally thousands of files and this takes forever, so this is why I want to sync through my router which never gets turned off.
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  1. I know that rsync cron can do that easily.
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